Tiling Arrays: Methods and Protocols by Tin-Lap LeeTiling Arrays: Methods and Protocols by Tin-Lap Lee

Tiling Arrays: Methods and Protocols

EditorTin-Lap Lee

Hardcover | August 24, 2013

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In Tiling Arrays: Methods and Protocols,  expert researchers in the field detail many of the methods which are now commonly used to study tiling microarrays in genomic discovery . These include methods and applications for transcriptional regulation, expression, genetic and epigenetic regulation, as well as techniques and skills on tiling microarray data analysis. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and key tips on troubleshooting and avoiding known pitfalls. Authoritative and practical, Tiling Arrays: Methods and Protocols  seeks to provide scientists with a comprehensive and down to earth approach to maximize results.
Title:Tiling Arrays: Methods and ProtocolsFormat:HardcoverDimensions:215 pages, 10 × 7.01 × 0 inPublished:August 24, 2013Publisher:Humana PressLanguage:English

The following ISBNs are associated with this title:

ISBN - 10:1627036067

ISBN - 13:9781627036061

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Table of Contents

Part I: OverView1. A Brief Introduction to Tiling Microarrays: Principles, Concepts, and ApplicationsChristophe Lemetre and Zhengdong D. Zhang   Part II: Transcriptional Regulation and Expression2. Design of Tiling Arrays and their Application to Bacterial Transcriptome AnalysisTakeshi Akama, Kazuaki Nakamura, Akito Tanoue, and Koichi Suzuki 3. Transcript Profiling in Arabidopsis with Genome Tiling MicroarraysDiana Coman, Wilhelm Gruissem, and Lars Hennig 4. Genome-wide Analysis of Transcription Factor Binding Sites in Skeletal Muscle Cells using ChIP-seqChung-Il An and Nobuko Hagiwara 5. Analysis of Allele-Specific Gene Expression Using a Target-Oriented Tiling Microarray AssayHuiyong Zhang, Xing-Wang Deng, and Lei Li  Part III: Genetics and Epigenetics Regulation6. Detection of Epigenetic Alterations Using Tiling ArraysHoi-Hung Cheung and Owen M Rennert 7. Investigating Gene Promoter Methylation in a Mouse Model of Status EpilepticusSuzanne F. C. Miller-Delaney, Sudipto Das, Raymond L. Stallings, and David C. Henshall Part IV: Data Analysis8. Integrative Analysis of ChIP-chip and ChIP-seq DatasetLihua Julie Zhu 9. HAT: A Novel Statistical Approach to Discover Functional Regions in the GenomeErdogan Taskesen, Bas Wouters, and Ruud Delwel 10. Inference of Alternative Splicing from Tiling Array DataJohannes Eichner 11. Analysis of in vivo Occupancy of Aebp1, a Transcription Factor, using High Resolution Tiling ArraySwati Sinha, Sainitin Donakonda,  and Satyanarayana MR Rao 12. Application of the Simple and Efficient MPeak Modeling in Binding Peak Identification in CHIP-CHIP StudiesMing Zheng, Yunmin Li,  and Yun-Fai Chris Lau 13. Evaluation of MeDIP-chip in the Context of Whole Genome Bisulphite Sequencing (WGBS-seq) in ArabidopsisRené Wardenaar, Haiyin Liu, Vincent Colot, Maria Colomé-Tatché, Frank Johannes 14. Mapping Genomic Features of Tiling Microarray Data by TileMapperHoi-Hung Cheung, Janek Claus, Sumeeta Singh, Chandan Sastry, Owen M  Rennert, Wai-Yee Chan, Tin-Lap Lee